Bioinformatics and Computational Biology Infrastructure for Julia
A julia code generator for regular expressions
Parse yer YAMLs
Biological sequences for the julia language
A data structure for efficient manipulation of sets of intervals
Fast composable IO streams
Fast, flexible zlib bindings.
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Datastructures and algorithms for working with genetic variation
Sequence alignment tools
Tools for genomic features in Julia.
FM-index for full-text search
For analysis of microbiome and microbial community data
Fully indexable dictionaries - access/rank/select operations
Biological Sequence Substitution Models for Julia
Nucleic and amino acid primitive types
Julia interface to APIs for various bio-related web services
The Wavelet Matrix
Common data encoding algorithms
Core types and interfaces for BioJulia packages
The BioJulia package for working with phylogenetic trees and geneologies.
Interfaces to common external biological tools from julia scripts and programs
A companion package for Microbiome.jl for working with the Biobakery family of computational tools