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Top Pkgs Packages

1

Bio

Bioinformatics and Computational Biology Infrastructure for Julia

2

Automa

A julia code generator for regular expressions

3

YAML

Parse yer YAMLs

4

BioSequences

Biological sequences for the julia language

5

IntervalTrees

A data structure for efficient manipulation of sets of intervals

6

BufferedStreams

Fast composable IO streams

7

Libz

Fast, flexible zlib bindings.

8

BioStructures

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

9

GeneticVariation

Datastructures and algorithms for working with genetic variation

10

BioAlignments

Sequence alignment tools

11

GenomicFeatures

Tools for genomic features in Julia.

12

FMIndexes

FM-index for full-text search

13

Microbiome

For analysis of microbiome and microbial community data

14

IndexableBitVectors

Fully indexable dictionaries - access/rank/select operations

15

SubstitutionModels

Biological Sequence Substitution Models for Julia

16

BioSymbols

Nucleic and amino acid primitive types

17

BioServices

Julia interface to APIs for various bio-related web services

18

WaveletMatrices

The Wavelet Matrix

19

Codecs

Common data encoding algorithms

20

BGZFStreams

BGZF Stream

21

BioCore

Core types and interfaces for BioJulia packages

22

Phylogenies

The BioJulia package for working with phylogenetic trees and geneologies.

23

BioTools

Interfaces to common external biological tools from julia scripts and programs

24

BBI

26

BiobakeryUtils

A companion package for Microbiome.jl for working with the Biobakery family of computational tools