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Top Pkgs Packages

1

PhyloNetworks

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

2

OpenGene

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

3

Pathogen

Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia

4

Gillespie

Stochastic Gillespie-type simulations using Julia

5

BioSeq

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

6

IntervalTrees

A data structure for efficient manipulation of sets of intervals

7

FusionDirect

(No maintenance) Detect gene fusion directly from raw fastq files

8

BioAlignments

Sequence alignment tools

9

FastaIO

Utilities to read/write FASTA format files in Julia

10

PhyloTrees

Phylogenetic trees in Julia

11

XSim

simulate sequence data and complicated pedigree structures

12

ProgressiveAligner

progressive alignment scripts for protein sequences

13

Phylogenetics

The Julia package for analysis of evolution and phylogeny

14

SpeedDate

Estimation of coalescence times between sequences.

15

Ensemble

Ensemble Samplers for Julia